File:2019-nCoV to bat-SL-CoVZC45 spike protein comparison.png
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Summary
Comparison of 2019-nCoV spike glycoprotein to spike protein of bat-SL-CoVZC45 .
----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| MFVFLVL-LPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSN MLFFLFLQFALVNSQCVNLTGRTPLNPNYTNSSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSW-YYSLTTNNAATKRTDNPILDFKDGIYFAATEHSN ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| IIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDG IIRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSGYYH-NNKTWSIREFAVYSSYANCTFEYVSKSFMLNISGNGGLFNTLREFVFRNVDG ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| YFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSET HFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRTLLTIHRGDPMP--NN-GWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSET ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| KCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS KCTLKSLTVQKGIYQTSNFRVQPTQSVVRFPNITNVCPFHKVFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDLCFTSVYADT ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP FLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWN---TAKQDVGNYF--YRSHRSTKLKPFERDLSSDENGVRTLSTYD---FNPNVPL------- ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| TNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVIT ----EYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPCSFGGVSVIT ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| PGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQ-SIIAYTMS PGTNTSLEVAVLYQDVNCTDVPTTIHADQLTPAWRIYATGTNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASI----LRST-SQKAIVAYTMS ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| LGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFG LGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTPPIKDFG ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| GFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF GFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGGISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPF ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSN GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFPREGVFVSN ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI GTHWFVTQRNFYEPKIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVARNLNESLI ----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100| DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
Self made
- Sources
- Wuhan seafood market pneumonia virus isolate 2019-nCoV WHU01, complete genome
- Bat SARS-like coronavirus isolate bat-SL-CoVZC45, complete genome
- Edits
- I have tweaked the alignment to show the SPRR insert at locations 681-684 based on this paper:
- Sequence Analysis Indicates that 2019-nCoV Virus Contains a Putative Furin Cleavage Site at the Boundary of S1 and S2 Domains of Spike Protein - Z. Wo, February 18, 2020 (preprint)
- Other versions
File history
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Date/Time | Thumbnail | Dimensions | User | Comment | |
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current | 09:57, 5 February 2020 | 931 × 1,215 (223 KB) | Petri Krohn (talk | contribs) | ||
09:47, 5 February 2020 | 931 × 1,215 (224 KB) | Petri Krohn (talk | contribs) | |||
09:03, 5 February 2020 | 931 × 1,174 (216 KB) | Petri Krohn (talk | contribs) | Comparison of 2019-nCoV spike glycoprotein to spike protein of bat-SL-CoVZC45 . Self made ;Sources * https://www.ncbi.nlm.nih.gov/nuccore/MN988668 * https://www.ncbi.nlm.nih.gov/nuccore/MG772933.1 |
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