File:2019-nCoV to bat-SL-CoVZC45 spike protein comparison.png

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Summary

Comparison of 2019-nCoV spike glycoprotein to spike protein of bat-SL-CoVZC45 .

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
MFVFLVL-LPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSN
MLFFLFLQFALVNSQCVNLTGRTPLNPNYTNSSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSW-YYSLTTNNAATKRTDNPILDFKDGIYFAATEHSN

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
IIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDG
IIRGWIFGTTLDNTSQSLLIVNNATNVIIKVCNFDFCYDPYLSGYYH-NNKTWSIREFAVYSSYANCTFEYVSKSFMLNISGNGGLFNTLREFVFRNVDG

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
YFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSET
HFKIYSKFTPVNLNRGLPTGLSVLQPLVELPVSINITKFRTLLTIHRGDPMP--NN-GWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSET

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
KCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS
KCTLKSLTVQKGIYQTSNFRVQPTQSVVRFPNITNVCPFHKVFNATRFPSVYAWERTKISDCIADYTVFYNSTSFSTFKCYGVSPSKLIDLCFTSVYADT

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQP
FLIRFSEVRQVAPGQTGVIADYNYKLPDDFTGCVIAWN---TAKQDVGNYF--YRSHRSTKLKPFERDLSSDENGVRTLSTYD---FNPNVPL-------

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
TNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVIT
----EYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGKDASDFIDSVRDPQTLEILDITPCSFGGVSVIT

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
PGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQ-SIIAYTMS
PGTNTSLEVAVLYQDVNCTDVPTTIHADQLTPAWRIYATGTNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTASI----LRST-SQKAIVAYTMS

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
LGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFG
LGAENSIAYANNSIAIPTNFSISVTTEVMPVSMAKTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTPPIKDFG

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
GFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF
GFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGGISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPF

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT
AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLIT

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSN
GRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAICHEGKAHFPREGVFVSN

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI
GTHWFVTQRNFYEPKIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDIDLGDISGINASVVNIQKEIDRLNEVARNLNESLI

----|--10|----|--20|----|--30|----|--40|----|--50|----|--60|----|--70|----|--80|----|--90|----|-100|
DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT
DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT

Self made

Sources
Edits
I have tweaked the alignment to show the SPRR insert at locations 681-684 based on this paper:
Other versions

NCoV SARS alignment.jpg

File history

Click on a date/time to view the file as it appeared at that time.

Date/TimeThumbnailDimensionsUserComment
current09:57, 5 February 2020Thumbnail for version as of 09:57, 5 February 2020931 × 1,215 (223 KB)Petri Krohn (talk | contribs)
09:47, 5 February 2020Thumbnail for version as of 09:47, 5 February 2020931 × 1,215 (224 KB)Petri Krohn (talk | contribs)
09:03, 5 February 2020Thumbnail for version as of 09:03, 5 February 2020931 × 1,174 (216 KB)Petri Krohn (talk | contribs)Comparison of 2019-nCoV spike glycoprotein to spike protein of bat-SL-CoVZC45 . Self made ;Sources * https://www.ncbi.nlm.nih.gov/nuccore/MN988668 * https://www.ncbi.nlm.nih.gov/nuccore/MG772933.1

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